Due to the increasing life expectancy the incidence of gonarthrosis, the degeneration of articular cartilage and bone in the knee joint, is increasing worldwide. Although the success rate of knee arthroplasties is high, complications like the loosening of the implant necessitate subsequent treatments. Moreover, the morphology and microstructure of the knee joint varies considerably between patients, therefore the anatomical expertise of orthopedic surgeons is essential. In this analysis we therefore investigate the variation and micro-architectural alterations in subchondral bone in osteoarthritis (OA) patients undergoing a knee replacement surgery. We investigate OA bone degenerations using clinical X-rays and micro-computed tomography (micro-CT). Tibial bone samples are collected from 100 patients undergoing a total knee arthroplasty at the Klinikum Wels-Grieskirchen. Images are obtained using an industrial micro-CT scanner RayScan 250E. Microstructural parameters include bone volume fraction and cortical thickness of the subcondral bone and are obtained from micro-CT images with isometric voxel sizes of 50 µm. Using micro-CT, we show a high morphological variation in relation to cortical thickness, both within the respective condyle as well as between the medial and lateral condyle. Cortical thickness seems to correlate with cartilage thickness and knee joint alignment. The results are incorporated into a gonarthrosis database that integrates microstructural parameters via a combined analysis of X-ray and micro-CT data. This database aims to facilitate the assessment of osteoarthritis, i.e. in relation to cartilage degeneration, in future patients on the basis of the investigated patient collective.